2A2E Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2A2E_001 | 1/A/77:83 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_2A2E_002 | 1/A/92:97 | GNRA | geometric HL_5J7L_027 NA | |
| HL_2A2E_003 | 1/A/156:164 | No text annotation | geometric HL_1U9S_003 HL_87268.4 | |
| HL_2A2E_004 | 1/A/178:183 | GNRA | geometric HL_4WF9_065 HL_34789.6 | |
| HL_2A2E_006 | 1/A/275:280 | GNRA related | geometric HL_8G9Z_003 HL_37569.4 | |
| HL_2A2E_007 | 1/A/77:83 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_2A2E_008 | 1/A/92:97 | GNRA | geometric HL_5J7L_027 NA | |
| HL_2A2E_009 | 1/A/156:164 | No text annotation | geometric HL_1U9S_003 HL_87268.4 | |
| HL_2A2E_010 | 1/A/178:183 | GNRA | geometric HL_4WF9_065 HL_34789.6 | |
| HL_2A2E_012 | 1/A/275:280 | GNRA related | geometric HL_8G9Z_003 HL_37569.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2A2E_005 | No text annotation | ||
| HL_2A2E_013 | No text annotation | ||
| HL_2A2E_011 | No text annotation | ||
| HL_2A2E_014 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2A2E_006 | 1/A/170:172, 1/A/189:192 | Intercalated cWW | geometric IL_7A0S_044 IL_53541.1 | |
| IL_2A2E_013 | 1/A/24:25, 1/A/38:40 | No text annotation | ||
| IL_2A2E_014 | 1/A/51:53, 1/A/319:320 | No text annotation | ||
| IL_2A2E_002 | 1/A/102:107, 1/A/200:202 | No text annotation | ||
| IL_2A2E_003 | 1/A/107:109, 1/A/196:200 | No text annotation | ||
| IL_2A2E_004 | 1/A/126:127, 1/A/139:142 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_73108.4 | |
| IL_2A2E_016 | 1/A/24:25, 1/A/38:40 | No text annotation | ||
| IL_2A2E_017 | 1/A/51:53, 1/A/319:320 | No text annotation | ||
| IL_2A2E_009 | 1/A/102:107, 1/A/200:202 | No text annotation | ||
| IL_2A2E_010 | 1/A/107:109, 1/A/196:200 | No text annotation | ||
| IL_2A2E_011 | 1/A/126:127, 1/A/139:142 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_73108.4 | |
| IL_2A2E_012 | 1/A/170:172, 1/A/189:192 | Intercalated cWW | geometric IL_7A0S_044 IL_53541.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2A2E_001 | No text annotation | ||
| IL_2A2E_015 | No text annotation | ||
| IL_2A2E_005 | Isolated cWH basepair | ||
| IL_2A2E_007 | No text annotation | ||
| IL_2A2E_008 | Isolated non-canonical cWW contact | ||
| IL_2A2E_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J6_2A2E_003 | 1/A/57:73, 1/A/87:88, 1/A/101:107, 1/A/200:215, 1/A/261:268, 1/A/287:315 | No text annotation | ||
| J6_2A2E_004 | 1/A/57:73, 1/A/87:88, 1/A/101:107, 1/A/200:215, 1/A/261:268, 1/A/287:315 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J6_2A2E_001 | No text annotation | ||
| J6_2A2E_002 | No text annotation |
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